Calculate flux for multiple species — batch

Batch calculate flux in parallel using slurm

Usage

batch_flux(
  model_paths,
  flux_paths = NULL,
  base_path = NULL,
  memory = 12,
  walltime = 180,
  show_progress = TRUE
)

model_paths: The path to one or more BirdFlow models saved either as HDF5 or RDS files.
flux_paths: Paths (ending in ".rds") to save flux to. It should be the same length as model_paths or NULL in which case "_flux.rds" will be appended to model_paths after removing the extension.
base_path: The directory in which the batch tools registry directory should be created (used to manage the run). If NULL the directory of the first path in model_paths will be used. Either way the registry directory will be a concatenation of "batch_flux", the date, and "_mf".
memory: GB of memory allocated for each flux calculation.
walltime: Elapsed time in minutes allocated to the job.
show_progress: If TRUE batch_flux() will display a progress bar and wait for all the launched jobs to finish. If FALSE batch_flux() will exit immediately after launching.

Nothing is returned.